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LOC4337268 uncharacterized LOC4337268 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337268, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4337268
Gene description
uncharacterized LOC4337268
Locus tag
OSNPB_040658600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
24K23.8
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Genomic context

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See LOC4337268 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34109773..34111670, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33589847..33591861, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic Neighboring gene ABC transporter F family member 4-like Neighboring gene cold-responsive protein kinase 1 Neighboring gene uncharacterized LOC4337270

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4337268
Names
Os04g0658600
ribosomal RNA processing protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    34109773..34111670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781077.3 → XP_015636563.1  uncharacterized protein LOC4337268

    UniProtKB/TrEMBL
    A0A0N7KJU9, A0A5S6RCY2, A0A979HKR4, B9FCX7, Q0J9E4, Q7XN82, Q8S3P9
    Conserved Domains (1) summary
    pfam05997
    Location:18 → 222
    Nop52; Nucleolar protein,Nop52
Nucleotide Protein
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