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LOC4337223 oryzain alpha chain-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337223, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4337223
Gene description
oryzain alpha chain-like
Locus tag
OSNPB_040650000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
H0212B02.7
Annotation information
Annotation category: suggests misassembly
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Genomic context

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See LOC4337223 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33638870..33642483, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33123325..33126995, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable inactive receptor kinase At5g67200 Neighboring gene protein IRX15-LIKE Neighboring gene GDSL esterase/lipase At5g03610 Neighboring gene probable glucuronosyltransferase Os04g0650300

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Induced expression of oryzain alpha gene encoding a cysteine proteinase under stress conditions. Fu Y, et al. J Plant Res, 2007 May. PMID 17404686
  2. Molecular cloning and gibberellin-induced expression of multiple cysteine proteinases of rice seeds (oryzains). Watanabe H, et al. J Biol Chem, 1991 Sep 5. PMID 1885617
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oryzain alpha chain
Names
LOC_Os04g55650
OSJNBb0059K02.8
Oryzain alpha chain
NP_001389372.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402443.1 → NP_001389372.1  oryzain alpha chain precursor

    Status: VALIDATED

    Source sequence(s)
    KR905695
    UniProtKB/Swiss-Prot
    P25776, Q25AN0, Q7XMQ3
    UniProtKB/TrEMBL
    Q076Q8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    33638870..33642483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P25776.2 GenPept UniProtKB/Swiss-Prot:P25776

Gene LinkOut

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Molecular Biology Databases
Research Materials