U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4337056 starch synthase 3, chloroplastic/amyloplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337056, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4337056
Gene description
starch synthase 3, chloroplastic/amyloplastic
Locus tag
OSNPB_040624600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SSIII-1
Expression
Broad expression in roots after flowering (RPKM 30.6), leaves before flowering (RPKM 19.2) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4337056 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32259297..32267282, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31751598..31759576, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene autophagy-related protein 8B-like Neighboring gene polyphenol oxidase I, chloroplastic-like Neighboring gene polyphenol oxidase I, chloroplastic Neighboring gene vegetative cell wall protein gp1 Neighboring gene binding partner of ACD11 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm. Fujita N, et al. Plant Physiol, 2007 Aug. PMID 17586688, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
starch synthase 3, chloroplastic/amyloplastic
Names
Os04g0624600
soluble starch synthase III-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    32259297..32267282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780729.3 → XP_015636215.1  starch synthase 3, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A0N7KJQ8, A0A8J8YHC2, B9FCL6, D0TZT3, Q0J9Z0, Q8W1P1
    Conserved Domains (1) summary
    PLN02316
    Location:60 → 1215
    PLN02316; synthase/transferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials