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LOC4337011 probable UDP-arabinose 4-epimerase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337011, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4337011
Gene description
probable UDP-arabinose 4-epimerase 2
Locus tag
OSNPB_040618200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
UEL-2; OsUEL-2; OsJ_16180
Expression
Ubiquitous expression in roots before flowering (RPKM 64.0), leaves after flowering (RPKM 55.7) and 6 other tissues See more
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Genomic context

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See LOC4337011 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31911055..31914971)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31403368..31407253)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene pentatricopeptide repeat-containing protein At3g14580, mitochondrial Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene gamma-soluble NSF attachment protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glucose 4-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactose catabolic process via UDP-galactose IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-arabinose 4-epimerase 2
Names
LOC_Os04g52730
OSJNBa0058K23.4
OSJNBa0093O08.14
UDP-D-xylose 4-epimerase 2
UDP-galactose 4-epimerase-like protein 2
NP_001389358.1
NP_001389359.1
XP_066165295.1
XP_066165296.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402429.1 → NP_001389358.1  probable UDP-arabinose 4-epimerase 2

    Status: VALIDATED

    Source sequence(s)
    AB097461, CB651700, CI100269, CI137314, CI310177
    UniProtKB/Swiss-Prot
    B7EBH1, Q7X8J9, Q8H0B6

  2. NM_001402430.1 → NP_001389359.1  probable UDP-arabinose 4-epimerase 2

    Status: VALIDATED

    Source sequence(s)
    AB097461, CB651700, CI100269, CI137314, CI310177
    UniProtKB/Swiss-Prot
    B7EBH1, Q7X8J9, Q8H0B6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    31911055..31914971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309198.1 → XP_066165295.1  probable UDP-arabinose 4-epimerase 2 isoform X1

    UniProtKB/Swiss-Prot
    B7EBH1, Q7X8J9, Q8H0B6

  2. XM_066309199.1 → XP_066165296.1  probable UDP-arabinose 4-epimerase 2 isoform X1

    UniProtKB/Swiss-Prot
    B7EBH1, Q7X8J9, Q8H0B6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H0B6.1 GenPept UniProtKB/Swiss-Prot:Q8H0B6

Gene LinkOut

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