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NAL1 Protein NARROW LEAF 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336986, updated on 10-Oct-2024

Summary

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Gene symbol
NAL1
Gene description
Protein NARROW LEAF 1
Locus tag
OSNPB_040615000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GFP; SPIKE; qFLW4; LSCHL4; OsJ_16147
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Genomic context

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See NAL1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31711152..31722357)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31203502..31214734)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyrate transaminase 1, mitochondrial-like Neighboring gene COP1-interactive protein 1 Neighboring gene lecithin-cholesterol acyltransferase-like 4 Neighboring gene cysteine-rich and transmembrane domain-containing protein WIH2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.). Lin L, et al. Biochem Biophys Res Commun, 2019 Aug 27. PMID 31272720
  2. Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice. Hirotsu N, et al. Sci Rep, 2017 Nov 21. PMID 29162918, Free PMC Article
  3. Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport. Qi J, et al. Plant Physiol, 2008 Aug. PMID 18562767, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. NAL1 regulates leaf shape by affecting cell expansion in rice.
    Title: Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).
  2. NAL1 allele does not increase whole-leaf photosynthesis but plays a role in regulating spatial and temporal trade-offs among traits at the whole-plant level.
    Title: Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NARROW LEAF 1
Names
LOC_Os04g52479
Protein GREEN FOR PHOTOSYNTHESIS
Protein QUANTITATIVE TRAIT LOCUS FOR FLAG LEAF WIDTH 4
Protein SPIKELET NUMBER
narrow leaf 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419864.1 → NP_001406793.1  protein NARROW LEAF 1

    Status: VALIDATED

    Source sequence(s)
    AP014960, EU093963
    UniProtKB/Swiss-Prot
    A0A0P0WF43, B4XT64, Q0JA57
    UniProtKB/TrEMBL
    A0A896WPH7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    31711152..31722357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309191.1 → XP_066165288.1  protein NARROW LEAF 1 isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0WF43, B4XT64, Q0JA57
    UniProtKB/TrEMBL
    A0A896WPH7

  2. XM_066309196.1 → XP_066165293.1  protein NARROW LEAF 1 isoform X3

  3. XM_066309190.1 → XP_066165287.1  protein NARROW LEAF 1 isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0WF43, B4XT64, Q0JA57
    UniProtKB/TrEMBL
    A0A896WPH7

  4. XM_066309195.1 → XP_066165292.1  protein NARROW LEAF 1 isoform X3

  5. XM_066309193.1 → XP_066165290.1  protein NARROW LEAF 1 isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0WF43, B4XT64, Q0JA57
    UniProtKB/TrEMBL
    A0A896WPH7

  6. XM_066309194.1 → XP_066165291.1  protein NARROW LEAF 1 isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0WF43, B4XT64, Q0JA57
    UniProtKB/TrEMBL
    A0A896WPH7

  7. XM_066309192.1 → XP_066165289.1  protein NARROW LEAF 1 isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0WF43, B4XT64, Q0JA57
    UniProtKB/TrEMBL
    A0A896WPH7

  8. XM_066309188.1 → XP_066165285.1  protein NARROW LEAF 1 isoform X1

  9. XM_066309189.1 → XP_066165286.1  protein NARROW LEAF 1 isoform X1

  10. XM_066309187.1 → XP_066165284.1  protein NARROW LEAF 1 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B4XT64.1 GenPept UniProtKB/Swiss-Prot:B4XT64

Gene LinkOut

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