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LOC4336976 small ribosomal subunit protein uS17 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336976, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336976
Gene description
small ribosomal subunit protein uS17
Locus tag
OSNPB_040613600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 198.3), milk grains (RPKM 132.5) and 6 other tissues See more
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Genomic context

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See LOC4336976 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31613519..31615433)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31105970..31107929)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336974 Neighboring gene small ribosomal subunit protein uS17 Neighboring gene UDP-N-acetylglucosamine diphosphorylase 2 Neighboring gene methyl-CpG-binding domain-containing protein 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein uS17
Names
Os04g0613600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    31613519..31615433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781147.3 → XP_015636633.1  small ribosomal subunit protein uS17

    UniProtKB/TrEMBL
    A0A8I3B3E5, A2XXG3, B8AU50, Q0D5F2, Q0JA67, Q7XIK5, Q7XLD0, Q8H4T5
    Conserved Domains (1) summary
    PTZ00241
    Location:1 → 145
    PTZ00241; 40S ribosomal protein S11; Provisional
Nucleotide Protein
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