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LOC4336894 probable protein-S-isoprenylcysteine O-methyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336894, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336894
Gene description
probable protein-S-isoprenylcysteine O-methyltransferase
Locus tag
OSNPB_040602900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 8.0), flowers (RPKM 7.9) and 6 other tissues See more
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Genomic context

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See LOC4336894 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30934405..30937902)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30428176..30431743)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene alkylated DNA repair protein ALKBH8 homolog Neighboring gene dual specificity protein kinase YAK1 homolog Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene uncharacterized LOC4336896 Neighboring gene probable E3 ubiquitin-protein ligase RHG1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in C-terminal protein methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable protein-S-isoprenylcysteine O-methyltransferase
Names
Os04g0602900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    30934405..30937902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781423.3 → XP_015636909.1  probable protein-S-isoprenylcysteine O-methyltransferase

    UniProtKB/Swiss-Prot
    A2XX73, A3AX47, Q01HS5, Q0JAE6, Q7XSR9
    UniProtKB/TrEMBL
    B8ATT2, B9FCB8
    Conserved Domains (1) summary
    COG2020
    Location:56 → 237
    STE14; Protein-S-isoprenylcysteine O-methyltransferase Ste14 [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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