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LOC4336870 cell division cycle 20.2, cofactor of APC complex [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336870, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4336870
Gene description
cell division cycle 20.2, cofactor of APC complex
Locus tag
OSNPB_040599800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4336870 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30774062..30776940)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30267815..30270708)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266263 Neighboring gene uncharacterized LOC4336869 Neighboring gene clathrin interactor EPSIN 1 Neighboring gene myb family transcription factor PHL11 Neighboring gene uncharacterized LOC4336873

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables anaphase-promoting complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin ligase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anaphase-promoting complex-dependent catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of anaphase-promoting complex-dependent catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of anaphase-promoting complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell division cycle 20.2, cofactor of APC complex
Names
Os04g0599800
putative WD repeat-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    30774062..30776940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015779919.3 → XP_015635405.1  cell division cycle 20.2, cofactor of APC complex isoform X1

    UniProtKB/TrEMBL
    A0A0N7KJM4, Q0JAG9
    Conserved Domains (2) summary
    COG2319
    Location:161 → 478
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:197 → 235
    7WD40; WD40 repeat [structural motif]

  2. XM_015779920.3 → XP_015635406.1  cell division cycle 20.2, cofactor of APC complex isoform X2

    UniProtKB/TrEMBL
    B8ATM4, B9FCA5, Q7XPT3
    Conserved Domains (2) summary
    COG2319
    Location:161 → 448
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:197 → 235
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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