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LOC4336595 malate dehydrogenase, cytoplasmic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336595, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336595
Gene description
malate dehydrogenase, cytoplasmic-like
Locus tag
OSNPB_040551200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4336595 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28110188..28113393)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27605151..27608345)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable aquaporin TIP5-1 Neighboring gene aquaporin TIP2-3-like Neighboring gene O-fucosyltransferase 29 Neighboring gene squamosa promoter-binding-like protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-malate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADH metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in malate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxaloacetate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
malate dehydrogenase, cytoplasmic-like
Names
Os04g0551200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    28110188..28113393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778998.3 → XP_015634484.1  malate dehydrogenase, cytoplasmic-like

    UniProtKB/TrEMBL
    B9FGG9, Q01JC3, Q7FAT9
    Conserved Domains (1) summary
    PLN00135
    Location:45 → 352
    PLN00135; malate dehydrogenase
Nucleotide Protein
Heading Accession and Version

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