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LOC4336389 beta-glucosidase 16-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336389, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4336389
Gene description
beta-glucosidase 16-like
Locus tag
OSNPB_040513400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BGLU16; Os4bglu16
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Genomic context

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See LOC4336389 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26164591..26173487, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25658234..25667058)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable pectinesterase/pectinesterase inhibitor 13 Neighboring gene beta-glucosidase 16 Neighboring gene beta-glucosidase 18-like Neighboring gene uncharacterized LOC136356351

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase 16
Names
LOC_Os04g43390
OSJNBa0004N05.24
OSJNBb0070J16.1
NP_001406594.1
XP_015636694.1
XP_015636695.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419665.1 → NP_001406594.1  beta-glucosidase 16 precursor

    Status: VALIDATED

    Source sequence(s)
    AK066850, AP014960, CB642854, CB674065, CI188021, CI572818, CI644596
    UniProtKB/Swiss-Prot
    A0A0P0WC95, A0A0P0WCR8, Q0JBS0, Q7XSK2
    UniProtKB/TrEMBL
    B8ARR8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    26164591..26173487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781209.2 → XP_015636695.1  beta-glucosidase 16 isoform X2

    UniProtKB/TrEMBL
    A3AVJ3
    Conserved Domains (1) summary
    cl23725
    Location:30 → 512
    Glyco_hydro; Glycosyl hydrolases

  2. XM_015781208.2 → XP_015636694.1  beta-glucosidase 16 isoform X1

    UniProtKB/TrEMBL
    A3AVJ3
    Conserved Domains (1) summary
    cl23725
    Location:30 → 533
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XSK2.2 GenPept UniProtKB/Swiss-Prot:Q7XSK2

Gene LinkOut

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Molecular Biology Databases
Research Materials