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LOC4336294 S-adenosylmethionine decarboxylase proenzyme-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336294, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4336294
Gene description
S-adenosylmethionine decarboxylase proenzyme-like
Locus tag
OSNPB_040498600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SAMDC; AdoMetDC; OsJ_004076
Expression
Ubiquitous expression in flower buds (RPKM 547.5), mature seeds (RPKM 512.0) and 6 other tissues See more
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Genomic context

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See LOC4336294 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25412384..25415475)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24915029..24918140)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 6b-2 Neighboring gene uncharacterized LOC9267297 Neighboring gene peroxidase 18 Neighboring gene cell division control protein 48 homolog B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Characterization of monocot and dicot plant S-adenosyl-l-methionine decarboxylase gene families including identification in the mRNA of a highly conserved pair of upstream overlapping open reading frames. Franceschetti M, et al. Biochem J, 2001 Jan 15. PMID 11139406, Free PMC Article
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables adenosylmethionine decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spermidine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-adenosylmethionine decarboxylase proenzyme
Names
LOC_Os04g42090
OSJNBa0029H02.4
OSJNBa0067K08.23
NP_001389314.1
NP_001389315.1
NP_001389316.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402385.1 → NP_001389314.1  S-adenosylmethionine decarboxylase proenzyme

    Status: VALIDATED

    Source sequence(s)
    CF280389, CI568111, Y07766
    UniProtKB/Swiss-Prot
    A2ZZV4, Q0JC10
    UniProtKB/TrEMBL
    B7ED49

  2. NM_001402386.1 → NP_001389315.1  S-adenosylmethionine decarboxylase proenzyme

    Status: VALIDATED

    Source sequence(s)
    CF280389, CI745086, Y07766
    UniProtKB/Swiss-Prot
    A2ZZV4, Q0JC10
    UniProtKB/TrEMBL
    B7ED49

  3. NM_001402387.1 → NP_001389316.1  S-adenosylmethionine decarboxylase proenzyme

    Status: VALIDATED

    Source sequence(s)
    AP014960, CB668481, CF280389, CI579151, Y07766
    UniProtKB/Swiss-Prot
    A2ZZV4, Q0JC10
    UniProtKB/TrEMBL
    B7ED49

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    25412384..25415475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JC10.1 GenPept UniProtKB/Swiss-Prot:Q0JC10

Gene LinkOut

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Molecular Biology Databases
Research Materials