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LOC4336145 beta-glucosidase 12-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336145, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4336145
Gene description
beta-glucosidase 12-like
Locus tag
OSNPB_040474800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BGLU12; Os4bglu12; OsJ_15166
Expression
Broad expression in flower buds (RPKM 117.6), leaves after flowering (RPKM 81.9) and 5 other tissues See more
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Genomic context

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See LOC4336145 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24242667..24247905, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (23747600..23752774, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271752 Neighboring gene beta-glucosidase 10-like Neighboring gene beta-glucosidase 11-like Neighboring gene uncharacterized LOC136355974 Neighboring gene beta-glucosidase 13-like Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Expression, purification, crystallization and preliminary X-ray analysis of rice (Oryza sativa L.) Os4BGlu12 beta-glucosidase. Sansenya S, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2010 Mar 1. PMID 20208171, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Diffraction data sets of beta-glucosidase for the apo and inhibitor-bound forms were collected to 2.50 and 2.45 A resolution, respectively.
    Title: Expression, purification, crystallization and preliminary X-ray analysis of rice (Oryza sativa L.) Os4BGlu12 beta-glucosidase.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase 12
Names
LOC_Os04g39880
OSJNBa0022H21.3
NP_001389307.1
XP_066165257.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402378.1 → NP_001389307.1  beta-glucosidase 12 precursor

    Status: VALIDATED

    Source sequence(s)
    AK105375, CI247132, CI247902, CI587600, CI640104, CI654784
    UniProtKB/Swiss-Prot
    B7EQY4, Q0JCF3, Q7XKV4

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    24242667..24247905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309160.1 → XP_066165257.1  beta-glucosidase 12 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XKV4.2 GenPept UniProtKB/Swiss-Prot:Q7XKV4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials