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LOC4336142 beta-glucosidase 10-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336142, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4336142
Gene description
beta-glucosidase 10-like
Locus tag
OSNPB_040474500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BGLU10; Os4bglu10; OsJ_17051
Expression
Broad expression in flowers (RPKM 18.5), flower buds (RPKM 12.0) and 6 other tissues See more
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Genomic context

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See LOC4336142 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24223113..24228759, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (23727975..23733621, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938692 Neighboring gene putative beta-glucosidase 9 Neighboring gene uncharacterized LOC136356310 Neighboring gene uncharacterized LOC9271752 Neighboring gene beta-glucosidase 11-like Neighboring gene beta-glucosidase 12-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase 10
Names
LOC_Os04g39840
OSJNBa0022H21.1
NP_001406355.1
XP_066165256.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419426.1 → NP_001406355.1  beta-glucosidase 10 precursor

    Status: VALIDATED

    Source sequence(s)
    AK065793
    UniProtKB/Swiss-Prot
    Q0JCF6, Q7F9K4

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    24223113..24228759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309159.1 → XP_066165256.1  beta-glucosidase 10 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7F9K4.1 GenPept UniProtKB/Swiss-Prot:Q7F9K4

Gene LinkOut

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Molecular Biology Databases
Research Materials