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LOC4335974 D-galacturonate reductase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335974, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4335974
Gene description
D-galacturonate reductase
Locus tag
OSNPB_040447500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 6.8), mature seeds (RPKM 6.2) and 6 other tissues See more
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Genomic context

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See LOC4335974 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22809229..22812788)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22316728..22319566)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene putative lipoxygenase 5 Neighboring gene glutamate decarboxylase Neighboring gene non-functional NADPH-dependent codeinone reductase 2-like Neighboring gene glutamate decarboxylase 4 Neighboring gene uncharacterized LOC107278255

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aldose reductase (NADPH) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
D-galacturonate reductase
Names
Os04g0447500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    22809229..22812788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778667.3 → XP_015634153.1  D-galacturonate reductase

    UniProtKB/TrEMBL
    A2XTZ2, A3AU95, Q01J84, Q7XV15
    Conserved Domains (1) summary
    cd19124
    Location:25 → 305
    AKR_AKR4A_4B; AKR4A and AKR4B families of aldo-keto reductase (AKR)
Nucleotide Protein
Heading Accession and Version

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