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LOC4335782 alpha carbonic anhydrase 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335782, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4335782
Gene description
alpha carbonic anhydrase 1, chloroplastic
Locus tag
OSNPB_040412500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4335782 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (20768168..20774009)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (20387668..20390008)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335779 Neighboring gene glucan endo-1,3-beta-glucosidase 14 Neighboring gene uncharacterized LOC9271244 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene uncharacterized LOC4335784

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in one-carbon metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha carbonic anhydrase 1, chloroplastic
Names
Os04g0412500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    20768168..20774009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778829.3 → XP_015634315.1  alpha carbonic anhydrase 1, chloroplastic

    UniProtKB/TrEMBL
    A0A8J8YC30, B7E3S3, B8ARK6, B9FF31, Q01IT4, Q7X7M1, Q7XVG9
    Conserved Domains (1) summary
    cd03124
    Location:38 → 264
    alpha_CA_prokaryotic_like; Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...

  2. XM_066309631.1 → XP_066165728.1  alpha carbonic anhydrase 1, chloroplastic

    UniProtKB/TrEMBL
    A0A8J8YC30, B7E3S3, B8ARK6, B9FF31

  3. XM_066309630.1 → XP_066165727.1  alpha carbonic anhydrase 1, chloroplastic

    UniProtKB/TrEMBL
    A0A8J8YC30, B7E3S3, B8ARK6, B9FF31
Nucleotide Protein
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