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LOC4335702 chaperone protein ClpC1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335702, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4335702
Gene description
chaperone protein ClpC1, chloroplastic-like
Locus tag
OSNPB_040397100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CLPC1
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Genomic context

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See LOC4335702 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (19969147..19975712, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (19601354..19607919, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 45 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like Neighboring gene uncharacterized LOC107280807 Neighboring gene trihelix transcription factor ASR3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chaperone protein ClpC1, chloroplastic
Names
ATP-dependent Clp protease ATP-binding subunit ClpC homolog 1
Casein lytic proteinase C1
LOC_Os04g32560
OSJNBa0039C07.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419310.1 → NP_001406239.1  chaperone protein ClpC1, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AP014960
    UniProtKB/Swiss-Prot
    Q0JDK8, Q7F9I1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    19969147..19975712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309153.1 → XP_066165250.1  chaperone protein ClpC1, chloroplastic isoform X1

    UniProtKB/Swiss-Prot
    Q0JDK8, Q7F9I1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7F9I1.2 GenPept UniProtKB/Swiss-Prot:Q7F9I1

Gene LinkOut

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Molecular Biology Databases
Research Materials