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LOC4335621 uncharacterized LOC4335621 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335621, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4335621
Gene description
uncharacterized LOC4335621
Locus tag
OSNPB_040379300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 13.8), flowers (RPKM 11.3) and 6 other tissues See more
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Genomic context

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See LOC4335621 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (18874260..18884546)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (18520402..18530699)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277283 Neighboring gene uncharacterized LOC136356297 Neighboring gene uncharacterized LOC136351243 Neighboring gene uncharacterized LOC136356123 Neighboring gene uncharacterized LOC4335622 Neighboring gene uncharacterized LOC9268951 Neighboring gene RPM1-interacting protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4335621
Names
Os04g0379300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    18874260..18884546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780157.3 → XP_015635643.1  uncharacterized protein LOC4335621 isoform X1

    UniProtKB/TrEMBL
    A0A0P0W9H0, B8AT13, Q7XVE1
    Conserved Domains (2) summary
    pfam13649
    Location:81 → 177
    Methyltransf_25; Methyltransferase domain
    cl17173
    Location:544 → 693
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_026025129.2 → XP_025880914.1  uncharacterized protein LOC4335621 isoform X2

    UniProtKB/TrEMBL
    B9FET0
    Conserved Domains (1) summary
    cl17173
    Location:392 → 541
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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