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LOC4335478 FACT complex subunit SPT16-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335478, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4335478
Gene description
FACT complex subunit SPT16-like
Locus tag
OSNPB_040321600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SPT16
Expression
Ubiquitous expression in flower buds (RPKM 35.4), roots after flowering (RPKM 35.0) and 6 other tissues See more
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Genomic context

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See LOC4335478 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (15041823..15047560)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (14807381..14813145)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene 7-deoxyloganetin glucosyltransferase-like Neighboring gene uncharacterized LOC4335476 Neighboring gene serine carboxypeptidase 1 Neighboring gene probable protein phosphatase 2C 38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of FACT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fACT complex subunit SPT16
Names
FACT complex subunit SPT16
Facilitates chromatin transcription complex subunit SPT16
LOC_Os04g25550
OSJNBb0062H02.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419237.1 → NP_001406166.1  fACT complex subunit SPT16

    Status: VALIDATED

    Source sequence(s)
    AK121570, AP014960, CB640873
    UniProtKB/Swiss-Prot
    Q0JE60, Q7X923
    UniProtKB/TrEMBL
    B9FEF3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    15041823..15047560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7X923.2 GenPept UniProtKB/Swiss-Prot:Q7X923

Gene LinkOut

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Molecular Biology Databases
Research Materials