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LOC4335447 sucrose synthase 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335447, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4335447
Gene description
sucrose synthase 5-like
Locus tag
OSNPB_040309600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SUS5; OsSUS5
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Genomic context

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See LOC4335447 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (14244692..14249887)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (14008210..14013444)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268902 Neighboring gene uncharacterized LOC4335446 Neighboring gene uncharacterized LOC4335448 Neighboring gene 23 kDa jasmonate-induced protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 5
Names
LOC_Os04g24430
OSJNBa0033H08.16
Sucrose-UDP glucosyltransferase 5
NP_001406164.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419235.1 → NP_001406164.1  sucrose synthase 5

    Status: VALIDATED

    Source sequence(s)
    AB088485, CI042550, CI302158, HQ895723
    UniProtKB/Swiss-Prot
    H6TFZ4, Q0JE91, Q7XNQ9
    UniProtKB/TrEMBL
    Q01KW8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    14244692..14249887
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
H6TFZ4.1 GenPept UniProtKB/Swiss-Prot:H6TFZ4

Gene LinkOut

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Molecular Biology Databases
Research Materials