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LOC4335435 dnaJ protein ERDJ2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335435, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4335435
Gene description
dnaJ protein ERDJ2-like
Locus tag
OSNPB_040307200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
DJC43; ERDJ2; OsDjC43; OsERdj2; OsJ_14220
Expression
Ubiquitous expression in leaves after flowering (RPKM 41.2), roots after flowering (RPKM 40.9) and 6 other tissues See more
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Genomic context

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See LOC4335435 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (14070993..14077511)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (13834706..13841291)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene preprotein translocase subunit SECE1 Neighboring gene uncharacterized LOC4335431 Neighboring gene growth-regulating factor 2 Neighboring gene uncharacterized LOC136356277 Neighboring gene uncharacterized LOC112938739

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in post-translational protein targeting to endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Sec62/Sec63 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ protein ERDJ2
Names
Chaperone protein dnaJ C43
DnaJ protein ERDJ2
Endoplasmic reticulum dnaJ domain-containing protein 2
LOC_Os04g24180
OSJNBa0023J03.11
OSJNBa0024J22.1
Os04g0307200
dnaJ protein ERDJ2A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419232.1 → NP_001406161.1  dnaJ protein ERDJ2

    Status: VALIDATED

    Source sequence(s)
    AK059187, AK070019, CB000734, CB637406, CI276699, CI441931, CI590594
    UniProtKB/Swiss-Prot
    Q7XVN7
    UniProtKB/TrEMBL
    A2XRR9, Q01MF9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    14070993..14077511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XVN7.2 GenPept UniProtKB/Swiss-Prot:Q7XVN7

Gene LinkOut

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Molecular Biology Databases
Research Materials