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LOC4335131 acyl transferase 15-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335131, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4335131
Gene description
acyl transferase 15-like
Locus tag
OSNPB_040194466
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC4335131 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (6561529..6566475)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (6470724..6473283)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276469 Neighboring gene F-box protein At5g49610 Neighboring gene ABC transporter G family member 25-like Neighboring gene transcription factor PCF1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
acyl transferase 15-like
Names
Os04g0194466

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    6561529..6566475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026025029.2 → XP_025880814.1  acyl transferase 15-like

    UniProtKB/TrEMBL
    A0A8I3B1A4, B8AVQ8, Q0JEW3, Q7XX95
    Conserved Domains (1) summary
    cl23789
    Location:4 → 405
    PLN02481; Omega-hydroxypalmitate O-feruloyl transferase
Nucleotide Protein
Heading Accession and Version

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