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LOC4335001 sterol 3-beta-glucosyltransferase UGT80A2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335001, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4335001
Gene description
sterol 3-beta-glucosyltransferase UGT80A2
Locus tag
OSNPB_040131900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4335001 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (2071640..2083939, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (1985634..1997998, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic Neighboring gene sterol 3-beta-glucosyltransferase UGT80A2 Neighboring gene uncharacterized LOC136356043 Neighboring gene uncharacterized LOC4335002

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterol 3-beta-glucosyltransferase UGT80A2
Names
Os04g0131900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    2071640..2083939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781084.3 → XP_015636570.1  sterol 3-beta-glucosyltransferase UGT80A2

    UniProtKB/TrEMBL
    B8AUM3, Q0JF79, Q7XRN9
    Conserved Domains (1) summary
    cd03784
    Location:163 → 579
    GT1_Gtf-like; UDP-glycosyltransferases and similar proteins
Nucleotide Protein
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