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LOC4334894 probable glucuronosyltransferase Os04g0103100 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334894, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4334894
Gene description
probable glucuronosyltransferase Os04g0103100
Locus tag
OSNPB_040103100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GT43H; OsGT43H; OsJ_13499
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Genomic context

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See LOC4334894 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (218571..221896)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (215913..219268)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ATP-independent inner membrane protease subunit 2 Neighboring gene fatty acid amide hydrolase-like Neighboring gene eukaryotic translation initiation factor 3 subunit M Neighboring gene uncharacterized LOC107280780

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis. Lee C, et al. Plant Signal Behav, 2014. PMID 24525904, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucuronosyltransferase Os04g0103100
Names
GT43 family glycosyltransferase H
LOC_Os04g01280
OSJNBa0068L06.11
OSJNBa0094O15.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419043.1 → NP_001405972.1  probable glucuronosyltransferase Os04g0103100

    Status: VALIDATED

    Source sequence(s)
    CI138101, CI285926, CI429928, CI736815, KJ206905
    UniProtKB/Swiss-Prot
    Q7X7U3, Q7XTB2
    UniProtKB/TrEMBL
    A0A023NCQ6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    218571..221896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XTB2.2 GenPept UniProtKB/Swiss-Prot:Q7XTB2

Gene LinkOut

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Molecular Biology Databases
Research Materials