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LOC4334893 fatty acid amide hydrolase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334893, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4334893
Gene description
fatty acid amide hydrolase-like
Locus tag
OSNPB_040102700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 45.0), flower buds (RPKM 20.7) and 6 other tissues See more
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Genomic context

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See LOC4334893 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (190449..199673, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (187806..197105, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene phosphoglycerate mutase-like protein 1 Neighboring gene mitochondrial ATP-independent inner membrane protease subunit 2 Neighboring gene probable glucuronosyltransferase Os04g0103100 Neighboring gene eukaryotic translation initiation factor 3 subunit M

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Plant fatty acid (ethanol) amide hydrolases. Shrestha R, et al. Biochim Biophys Acta, 2006 Mar. PMID 16624618
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-(long-chain-acyl)ethanolamine deacylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acylethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fatty acid amide hydrolase-like
Names
N-acylethanolamine amidohydrolase
Os04g0102700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    190449..199673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777953.2 → XP_015633439.1  fatty acid amide hydrolase-like

    UniProtKB/Swiss-Prot
    A0A0N7KIG0, B8ATY3, Q01N44, Q0JFH7, Q15KE3, Q7XTB3
    Conserved Domains (1) summary
    COG0154
    Location:138 → 599
    GatA; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase [Translation, ribosomal structure and biogenesis]

RNA

  1. XR_001544901.3 RNA Sequence

  2. XR_010740818.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials