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LOC4334720 uncharacterized LOC4334720 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334720, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334720
Gene description
uncharacterized LOC4334720
Locus tag
OSNPB_030839000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4334720 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36228668..36231529, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35255792..35258725, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein STOP1 homolog Neighboring gene uncharacterized LOC4334719 Neighboring gene uncharacterized LOC4334721 Neighboring gene protein DETOXIFICATION 54

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4334720
Names
E3 ubiquitin-protein ligase RNF170
Os03g0839000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    36228668..36231529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774566.3 → XP_015630052.1  uncharacterized protein LOC4334720

    UniProtKB/TrEMBL
    B8AN60, B9F7H8, Q0DLY5, Q851N4
    Conserved Domains (2) summary
    cl01318
    Location:108 → 188
    DUF1232; Protein of unknown function (DUF1232)
    cl17238
    Location:16 → 59
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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