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LOC4334710 probable cellulose synthase A catalytic subunit 5 [UDP-forming] [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334710, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4334710
Gene description
probable cellulose synthase A catalytic subunit 5 [UDP-forming]
Locus tag
OSNPB_030837100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CESA5; OsCesA5; OsJ_012702
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Genomic context

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See LOC4334710 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36150387..36156236)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35177575..35183302)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene IAA-amino acid hydrolase ILR1-like 3 Neighboring gene IAA-amino acid hydrolase ILR1-like 4 Neighboring gene mRNA-decapping enzyme-like protein Neighboring gene transcription factor MYBS1 Neighboring gene nicotinate phosphoribosyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cellulose synthase A catalytic subunit 5 [UDP-forming]
Names
LOC_Os03g62090
OSJNBa0042I09.26
NP_001405925.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418996.1 → NP_001405925.1  probable cellulose synthase A catalytic subunit 5 [UDP-forming]

    Status: VALIDATED

    Source sequence(s)
    AK100877, AK101178, AP014959, CI274214, CI533153, CI611489, CI624598
    UniProtKB/Swiss-Prot
    A0A0P0W5S6, A2XNT2, Q851L8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    36150387..36156236
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q851L8.1 GenPept UniProtKB/Swiss-Prot:Q851L8

Gene LinkOut

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Molecular Biology Databases
Research Materials