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LOC4334702 actin-3-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334702, updated on 16-Jul-2024

Summary

Gene symbol
LOC4334702
Gene description
actin-3-like
Locus tag
OSNPB_030836000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
AC3; ACT3; RAC3; OsJ_13270
Expression
Ubiquitous expression in flower buds (RPKM 65.3), flowers (RPKM 65.1) and 6 other tissues See more
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Genomic context

See LOC4334702 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36098386..36102177, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35125577..35129379, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase BSL1 Neighboring gene ferredoxin-3, chloroplastic Neighboring gene abscisic acid 8'-hydroxylase 1-like Neighboring gene glycine-rich RNA-binding protein RZ1A Neighboring gene NDR1/HIN1-like protein 3

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
actin-3
Names
LOC_Os03g61970
OSJNBa0096I06.10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418989.1NP_001405918.1  actin-3

    Status: VALIDATED

    Source sequence(s)
    AK063598, CI432205, CI644792
    UniProtKB/Swiss-Prot
    A2XNS1, B7E8U0, P17299, Q10AZ4, Q75LK6
    UniProtKB/TrEMBL
    B8AMT7, B9FK20

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    36098386..36102177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)