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LOC4334481 hydroxyproline O-galactosyltransferase GALT6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334481, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4334481
Gene description
hydroxyproline O-galactosyltransferase GALT6
Locus tag
OSNPB_030803900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 13.5), roots after flowering (RPKM 7.8) and 6 other tissues See more
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Genomic context

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See LOC4334481 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34519181..34523677, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33546462..33551090, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene hydroxyproline O-galactosyltransferase GALT6 Neighboring gene protein NO VEIN Neighboring gene uncharacterized LOC4334483 Neighboring gene non-specific lipid transfer protein GPI-anchored 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6
Names
Os03g0803900
probable beta-1,3-galactosyltransferase 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    34519181..34523677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777459.3 → XP_015632945.1  hydroxyproline O-galactosyltransferase GALT6

    UniProtKB/TrEMBL
    A0A9K3Y8F0, A2XN25, A3ANS3, Q0DML0, Q10BV0
    Conserved Domains (1) summary
    PLN03133
    Location:152 → 655
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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Molecular Biology Databases
Research Materials