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LOC4334443 protein RTE1-HOMOLOG [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334443, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334443
Gene description
protein RTE1-HOMOLOG
Locus tag
OSNPB_030799500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4334443 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34297433..34299636)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33324990..33327210)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable myosin-binding protein 6 Neighboring gene uncharacterized LOC4334442 Neighboring gene chromatin remodeling protein EBS Neighboring gene probable GTP-binding protein OBGC2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RTE1-HOMOLOG
Names
Os03g0799500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    34297433..34299636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773338.3 → XP_015628824.1  protein RTE1-HOMOLOG

    UniProtKB/TrEMBL
    A0A0P0W4C8, A2XMZ1, Q851Q4
    Conserved Domains (1) summary
    pfam05608
    Location:27 → 148
    DUF778; Protein of unknown function (DUF778)
Nucleotide Protein
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