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LOC4334354 cullin-4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334354, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334354
Gene description
cullin-4
Locus tag
OSNPB_030786800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CUL4
Expression
Ubiquitous expression in leaves before flowering (RPKM 38.5), roots after flowering (RPKM 37.4) and 6 other tissues See more
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Genomic context

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See LOC4334354 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (33643662..33650651)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (32672019..32679109)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein WHAT'S THIS FACTOR 9, mitochondrial Neighboring gene tRNA (guanine(26)-N(2))-dimethyltransferase 1 Neighboring gene uncharacterized LOC4334355 Neighboring gene syntaxin-121-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cullin-RING ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cullin-4
Names
Os03g0786800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    33643662..33650651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776935.3 → XP_015632421.1  cullin-4

    UniProtKB/TrEMBL
    B9F6C9, Q10CD7
    Conserved Domains (2) summary
    pfam00888
    Location:140 → 737
    Cullin; Cullin family
    pfam10557
    Location:768 → 825
    Cullin_Nedd8; Cullin protein neddylation domain
Nucleotide Protein
Heading Accession and Version

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