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LOC4333995 lecithin-cholesterol acyltransferase-like 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333995, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4333995
Gene description
lecithin-cholesterol acyltransferase-like 1
Locus tag
OSNPB_030730000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 3.6), flowers (RPKM 2.3) and 5 other tissues See more
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Genomic context

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See LOC4333995 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30726070..30731565, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29844878..29847318, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ACT domain-containing protein ACR3 Neighboring gene uncharacterized LOC4333994 Neighboring gene serine carboxypeptidase-like 18 Neighboring gene serine carboxypeptidase-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lecithin-cholesterol acyltransferase-like 1
Names
Os03g0730000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    30726070..30731565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066308896.1 → XP_066164993.1  lecithin-cholesterol acyltransferase-like 1 isoform X2

  2. XM_026024321.2 → XP_025880106.2  lecithin-cholesterol acyltransferase-like 1 isoform X1

  3. XM_066308897.1 → XP_066164994.1  lecithin-cholesterol acyltransferase-like 1 isoform X3

    UniProtKB/TrEMBL
    A0A5S6R6K4, A0A8J8XNL6, B9FBC5, Q0DNW4, Q10DG8
Nucleotide Protein
Heading Accession and Version

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