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LOC4333967 inositol-tetrakisphosphate 1-kinase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333967, updated on 18-Sep-2024

Summary

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Gene symbol
LOC4333967
Gene description
inositol-tetrakisphosphate 1-kinase 3-like
Locus tag
OSNPB_030726200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsITPK3; OsJ_12420
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Genomic context

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See LOC4333967 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30417056..30423859)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29535966..29542815)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276301 Neighboring gene tubulin alpha-1 chain Neighboring gene CSC1-like protein RXW8 Neighboring gene uncharacterized LOC4333969

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-1,3,4-trisphosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-1,3,4-trisphosphate 6-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-3,4,5,6-tetrakisphosphate 1-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inositol trisphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inositol-tetrakisphosphate 1-kinase 3
Names
ITPK3 OsIPK1 (OsMIK)
ITPK3 OsIPK1?? (OsMIK)
Inositol 1,3,4-trisphosphate 5/6-kinase 3
Inositol-triphosphate 5/6-kinase 3
Ins(1,3,4)P(3) 5/6-kinase 3
LOC_Os03g51610
OSJNBa0013A09.13
OSJNBb0122C16.11
OsITP5/6K-3
NP_001405549.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418620.1 → NP_001405549.1  inositol-tetrakisphosphate 1-kinase 3

    Status: VALIDATED

    Source sequence(s)
    AK067068, AK110903
    UniProtKB/Swiss-Prot
    A0A0P0W2G1, B9FBA7, Q75GI4

RNA

  1. NR_184786.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK067068, AK110903, CB640641

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    30417056..30423859
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q75GI4.1 GenPept UniProtKB/Swiss-Prot:Q75GI4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials