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LOC4333966 tubulin alpha-1 chain [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333966, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4333966
Gene description
tubulin alpha-1 chain
Locus tag
OSNPB_030726100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TubA
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Genomic context

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See LOC4333966 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30407191..30410053)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29526097..29528991)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH18 Neighboring gene uncharacterized LOC107276301 Neighboring gene inositol-tetrakisphosphate 1-kinase 3-like Neighboring gene CSC1-like protein RXW8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin alpha-1 chain
Names
Os03g0726100
alpha tubulin
alpha-tublin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    30407191..30410053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774849.3 → XP_015630335.1  tubulin alpha-1 chain

    UniProtKB/TrEMBL
    A2XLK9, Q0DNZ2, Q43605, Q6AU01, Q75GI3, Q9FVI3
    Conserved Domains (1) summary
    PLN00221
    Location:1 → 439
    PLN00221; tubulin alpha chain; Provisional
Nucleotide Protein
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Molecular Biology Databases
Research Materials