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LOC4333964 COMPASS-like H3K4 histone methylase component WDR5A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333964, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4333964
Gene description
COMPASS-like H3K4 histone methylase component WDR5A
Locus tag
OSNPB_030725400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4333964 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30367090..30371623)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29486021..29490563)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333962 Neighboring gene lariat debranching enzyme-like Neighboring gene transcription factor bHLH18 Neighboring gene uncharacterized LOC107276301

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
COMPASS-like H3K4 histone methylase component WDR5A
Names
Os03g0725400
putative WD repeat-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418600.1 → NP_001405529.1  COMPASS-like H3K4 histone methylase component WDR5A

    Status: VALIDATED

    Source sequence(s)
    AK111860, CI606418
    UniProtKB/TrEMBL
    Q0DNZ4, Q10DN8

  2. NM_001418601.1 → NP_001405530.1  COMPASS-like H3K4 histone methylase component WDR5A

    Status: VALIDATED

    Source sequence(s)
    AK105499, CI606418
    UniProtKB/TrEMBL
    Q0DNZ4, Q10DN8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    30367090..30371623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772972.3 → XP_015628458.1  COMPASS-like H3K4 histone methylase component WDR5A isoform X1

    UniProtKB/TrEMBL
    Q0DNZ4, Q10DN8
    Conserved Domains (2) summary
    cd00200
    Location:11 → 314
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:22 → 60
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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