U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4333860 DELLA protein SLR1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333860, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4333860
Gene description
DELLA protein SLR1-like
Locus tag
OSNPB_030707600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GAI; SLR1; OsGAI; OsJ_12286
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4333860 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29386492..29389047)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28512604..28515156)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333858 Neighboring gene uncharacterized LOC4333859 Neighboring gene outer envelope protein 64, chloroplastic Neighboring gene phospholipase A2 homolog 3-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size by stabilizing SLR1 expression in rice. Lan J, et al. Plant Mol Biol, 2020 Nov. PMID 32808190
  2. Characterization of a new semi-dominant dwarf allele of SLR1 and its potential application in hybrid rice breeding. Wu Z, et al. J Exp Bot, 2018 Sep 14. PMID 29955878, Free PMC Article
  3. The DELLA Protein SLR1 Integrates and Amplifies Salicylic Acid- and Jasmonic Acid-Dependent Innate Immunity in Rice. De Vleesschauwer D, et al. Plant Physiol, 2016 Mar. PMID 26829979, Free PMC Article
  4. The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity. Hirano K, et al. Plant J, 2012 Aug. PMID 22429711
  5. SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice. Liao Z, et al. Nat Commun, 2019 Jun 21. PMID 31227696, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size by stabilizing SLR1 expression in rice.
    Title: Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size by stabilizing SLR1 expression in rice.
  2. Expression of SLR1 and five key GA biosynthetic genes was disturbed in Slr1-d6, and the interaction between Slr1-d6 and GID1 was decreased.
    Title: Characterization of a new semi-dominant dwarf allele of SLR1 and its potential application in hybrid rice breeding.
  3. Study shows that rice tiller number regulator MONOCULM 1 (MOC1) is protected from degradation by binding to the DELLA protein SLENDER RICE 1 (SLR1). Gibberellins (Gas) trigger the degradation of SLR1 and MOC1 leading to stem elongation and decrease in tiller number. This discovery provides a molecular explanation for the coordinated control of plant height and tiller number in rice by GAs, SLR1 and MOC1.
    Title: SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.
  4. Data suggest that the resistance-promoting effect of DELLA protein Slender Rice1 (SLR1) is due at least in part to its ability to boost both salicylic acid (SA) and jasmonic acid (JA) mediated defenses.
    Title: The DELLA Protein SLR1 Integrates and Amplifies Salicylic Acid- and Jasmonic Acid-Dependent Innate Immunity in Rice.
  5. The N-terminal region of SLR1 has two roles in gibberellin (GA)signaling: interaction with GID1 and transactivation activity.
    Title: The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity.
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
dELLA protein SLR1
Names
LOC_Os03g49990
OSJNBb0022E02.5
Protein SLENDER RICE1
slender rice 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418508.1 → NP_001405437.1  dELLA protein SLR1

    Status: VALIDATED

    Source sequence(s)
    AB030956, AU095344, CB647845, CB682141, CI236368, CI303686
    UniProtKB/Swiss-Prot
    B9FB42, Q18ND8, Q7G7J6, Q9MB96

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    29386492..29389047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7G7J6.1 GenPept UniProtKB/Swiss-Prot:Q7G7J6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials