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LOC4333856 transcription factor TB1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333856, updated on 12-Jul-2024

Summary

Gene symbol
LOC4333856
Gene description
transcription factor TB1-like
Locus tag
OSNPB_030706500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TCP8; OsTB1
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Genomic context

See LOC4333856 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29302237..29312960)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28428330..28430480)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 1 Neighboring gene protein FAF-like, chloroplastic Neighboring gene uncharacterized LOC136355884 Neighboring gene uncharacterized LOC4333857 Neighboring gene uncharacterized LOC4333858

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of secondary shoot formation IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
transcription factor TB1-like
Names
Os03g0706500
TCP transcription factor 8
teosinte branched1 protein
transcription factor TEOSINTE BRANCHED 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    29302237..29312960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774751.3XP_015630237.1  transcription factor TB1-like

    UniProtKB/Swiss-Prot
    Q8LN68, Q941M8, Q9ATR4
    UniProtKB/TrEMBL
    A3ALW7, Q7Y1X7
    Conserved Domains (1) summary
    pfam03634
    Location:115270
    TCP; TCP family transcription factor