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LOC4333853 phosphatidylinositol 4-phosphate 5-kinase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333853, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4333853
Gene description
phosphatidylinositol 4-phosphate 5-kinase 1
Locus tag
OSNPB_030705300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 16.0), flower buds (RPKM 12.6) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29231856..29236372, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28358093..28362631, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ARF guanine-nucleotide exchange factor GNL2-like Neighboring gene uncharacterized LOC112938169 Neighboring gene protein FAF-like, chloroplastic Neighboring gene transcription factor TB1-like Neighboring gene uncharacterized LOC136355884

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-4-phosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol 4-phosphate 5-kinase 1
Names
Os03g0705300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    29231856..29236372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777519.3 → XP_015633005.1  phosphatidylinositol 4-phosphate 5-kinase 1

    UniProtKB/TrEMBL
    B8AQB0, B9FAT9, Q8LN60
    Conserved Domains (1) summary
    PLN03185
    Location:32 → 727
    PLN03185; phosphatidylinositol phosphate kinase; Provisional
Nucleotide Protein
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