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LOC4333807 probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333807, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4333807
Gene description
probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4
Locus tag
OSNPB_030697200
Gene type
protein coding
RefSeq status
INFERRED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LOGL4; OsJ_12214
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC4333807 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (28817173..28819143)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (27943398..27945368)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278081 Neighboring gene nuclear transcription factor Y subunit A-9 Neighboring gene uncharacterized LOC107276366 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4
Names
LOC_Os03g49050
OSJNBb0021P10.15
Protein LONELY GUY-like 4
NP_001405430.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418501.1 → NP_001405430.1  probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4

    Status: INFERRED

    Source sequence(s)
    AP014959
    UniProtKB/Swiss-Prot
    Q10EN9, Q851C7
    UniProtKB/TrEMBL
    A2XKZ4

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    28817173..28819143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q851C7.1 GenPept UniProtKB/Swiss-Prot:Q851C7

Gene LinkOut

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Molecular Biology Databases
Research Materials