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LOC4333308 small ribosomal subunit protein uS3y [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333308, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4333308
Gene description
small ribosomal subunit protein uS3y
Locus tag
OSNPB_030577000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 232.4), roots before flowering (RPKM 157.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (21955426..21957860, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (21097553..21100030, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL13y Neighboring gene probable polyamine transporter At1g31830 Neighboring gene small nucleolar RNA snoR143 Neighboring gene small nucleolar RNA snoR143 Neighboring gene kinetochore protein NUF2 homolog Neighboring gene MOB kinase activator-like 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein uS3y
Names
40S ribosomal protein S3-2
Os03g0577000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    21955426..21957860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776863.3 → XP_015632349.1  small ribosomal subunit protein uS3y

    UniProtKB/TrEMBL
    A2XIT7, A3AJT6, Q10HT1, Q75G91
    Conserved Domains (1) summary
    PTZ00084
    Location:3 → 218
    PTZ00084; 40S ribosomal protein S3; Provisional
Nucleotide Protein
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