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LOC4333306 large ribosomal subunit protein eL13y [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333306, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4333306
Gene description
large ribosomal subunit protein eL13y
Locus tag
OSNPB_030576700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
bbc1l
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Genomic context

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See LOC4333306 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (21944318..21946407, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (21086451..21088645, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome non-ATPase regulatory subunit 11 homolog Neighboring gene acyl-CoA-binding domain-containing protein 3-like Neighboring gene probable polyamine transporter At1g31830 Neighboring gene small ribosomal subunit protein uS3y Neighboring gene small nucleolar RNA snoR143

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein eL13y
Names
60S ribosomal protein L13-2
BBC1-like protein
Os03g0576700
ribosomal protein large subunit 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    21944318..21946407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777166.3 → XP_015632652.1  large ribosomal subunit protein eL13y

    UniProtKB/TrEMBL
    A2XIT5, A3AJT4, Q10HT7, Q75G88, Q7XJB4, Q8S9G2
    Conserved Domains (1) summary
    pfam01294
    Location:7 → 187
    Ribosomal_L13e; Ribosomal protein L13e
Nucleotide Protein
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