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LOC4333165 probable ubiquitin conjugation factor E4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333165, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4333165
Gene description
probable ubiquitin conjugation factor E4
Locus tag
OSNPB_030427900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4333165 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (18341050..18348038)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17884897..17892015)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene glutelin type-A 3-like Neighboring gene uncharacterized LOC107280471 Neighboring gene uncharacterized LOC112938237 Neighboring gene alpha-copaene synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-ubiquitin ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ubiquitin conjugation factor E4
Names
Os03g0427900
Os03g0428000
putative U-box domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    18341050..18348038
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776021.3 → XP_015631507.1  probable ubiquitin conjugation factor E4

    UniProtKB/TrEMBL
    A0A0P0VZW9, A2XI79, A3AJB5, Q75I67
    Conserved Domains (2) summary
    cd16657
    Location:945 → 1014
    RING-Ubox_UBE4A; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 A (UBE4A) and similar proteins
    pfam10408
    Location:262 → 925
    Ufd2P_core; Ubiquitin elongating factor core
Nucleotide Protein
Heading Accession and Version

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