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LOC4333150 small ribosomal subunit protein eS19-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333150, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4333150
Gene description
small ribosomal subunit protein eS19-like
Locus tag
OSNPB_030424800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 395.2), milk grains (RPKM 271.1) and 6 other tissues See more
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Genomic context

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See LOC4333150 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (18183166..18184963)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17727022..17728856)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938245 Neighboring gene transcription factor MYB44-like Neighboring gene Albino Leaf1 Neighboring gene uncharacterized LOC4333152

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein eS19-like
Names
40S ribosomal protein S19
Os03g0424800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    18183166..18184963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775153.3 → XP_015630639.1  small ribosomal subunit protein eS19-like

    UniProtKB/Swiss-Prot
    P40978, Q10JD4, Q7G6L4
    UniProtKB/TrEMBL
    A2XI59, A6MZL9
    Conserved Domains (1) summary
    pfam01090
    Location:8 → 141
    Ribosomal_S19e; Ribosomal protein S19e
Nucleotide Protein
Heading Accession and Version

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