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LOC4333015 lysine-specific demethylase JMJ21 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333015, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4333015
Gene description
lysine-specific demethylase JMJ21
Locus tag
OSNPB_030389900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4333015 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15966768..15973981)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15614215..15621492)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like Neighboring gene small ribosomal subunit protein eS6 Neighboring gene serine/threonine-protein kinase SAPK1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase JMJ21
Names
F-box and other domain-containing protein
F-box protein At1g78280
Os03g0389900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    15966768..15973981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774890.3 → XP_015630376.1  lysine-specific demethylase JMJ21

    UniProtKB/TrEMBL
    A2XHI8, B9F8T2, Q75LR4
    Conserved Domains (3) summary
    pfam12937
    Location:15 → 61
    F-box-like; F-box-like
    cl21453
    Location:795 → 852
    PKc_like; Protein Kinases, catalytic domain
    cl21464
    Location:145 → 360
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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