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LOC4332978 probable F-actin-capping protein subunit beta [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332978, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4332978
Gene description
probable F-actin-capping protein subunit beta
Locus tag
OSNPB_030381200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4332978 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15466899..15470080)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15115095..15118338)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332976 Neighboring gene uncharacterized LOC4332977 Neighboring gene co-chaperone protein p23-1 Neighboring gene extensin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in barbed-end actin filament capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of F-actin capping protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable F-actin-capping protein subunit beta
Names
Os03g0381200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    15466899..15470080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775969.3 → XP_015631455.1  probable F-actin-capping protein subunit beta isoform X1

    UniProtKB/TrEMBL
    A0A0P0VYZ3, B8AQJ7, Q0DRI4, Q75M66
    Conserved Domains (1) summary
    pfam01115
    Location:6 → 234
    F_actin_cap_B; F-actin capping protein, beta subunit

  2. XM_015775970.3 → XP_015631456.1  probable F-actin-capping protein subunit beta isoform X2

    Conserved Domains (1) summary
    pfam01115
    Location:6 → 228
    F_actin_cap_B; F-actin capping protein, beta subunit
Nucleotide Protein
Heading Accession and Version

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