U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4332840 probable nucleolar protein 5-2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332840, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4332840
Gene description
probable nucleolar protein 5-2
Locus tag
OSNPB_030350100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
bip101
Expression
Ubiquitous expression in flower buds (RPKM 83.2), mature seeds (RPKM 76.1) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4332840 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (13182044..13186050, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (13126153..13130235, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase At1g54610 Neighboring gene uncharacterized LOC9271082 Neighboring gene probable nucleolar protein 5-2 Neighboring gene uncharacterized LOC136355578

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable nucleolar protein 5-2
Names
BRI1-KD interacting protein 101
Os03g0350100

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    13182044..13186050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775273.3 → XP_015630759.1  probable nucleolar protein 5-2

    UniProtKB/TrEMBL
    A0A0P0VY93, A2XGN8, Q0DRW2, Q10LH5
    Conserved Domains (2) summary
    COG1498
    Location:43 → 442
    SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
    pfam08156
    Location:2 → 66
    NOP5NT; NOP5NT (NUC127) domain

  2. XM_015775272.3 → XP_015630758.1  probable nucleolar protein 5-2

    UniProtKB/TrEMBL
    A0A0P0VY93, A2XGN8, Q0DRW2, Q10LH5
    Conserved Domains (2) summary
    COG1498
    Location:43 → 442
    SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
    pfam08156
    Location:2 → 66
    NOP5NT; NOP5NT (NUC127) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials