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LOC4332721 probable apyrase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332721, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4332721
Gene description
probable apyrase 1
Locus tag
OSNPB_030328400
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
APY1; ADPase; OsAPY1
Expression
Ubiquitous expression in flowers (RPKM 16.7), flower buds (RPKM 13.7) and 6 other tissues See more
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Genomic context

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See LOC4332721 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12076893..12082377, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12021782..12027348, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355837 Neighboring gene L10-interacting MYB domain-containing protein Neighboring gene transmembrane emp24 domain-containing protein p24delta9 Neighboring gene protein BIIDXI-like Neighboring gene zinc finger CCCH domain-containing protein 22-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable apyrase 1
Names
ATP-diphosphatase
ATP-diphosphohydrolase
Adenosine diphosphatase
LOC_Os03g21120
OSJNBb0014I10.10
NP_001404569.1
XP_025879956.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417640.1 → NP_001404569.1  probable apyrase 1

    Status: PROVISIONAL

    Source sequence(s)
    AP014959, AU095151, AU097482, CB651936, CB651937, CB659453, CB667680
    UniProtKB/Swiss-Prot
    Q8H7L6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    12076893..12082377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026024171.2 → XP_025879956.1  probable apyrase 1 isoform X1

    UniProtKB/TrEMBL
    B8ANH6
    Conserved Domains (1) summary
    cl17037
    Location:86 → 446
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H7L6.1 GenPept UniProtKB/Swiss-Prot:Q8H7L6

Gene LinkOut

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Molecular Biology Databases
Research Materials