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LOC4332538 eukaryotic translation initiation factor 2 subunit alpha homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332538, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4332538
Gene description
eukaryotic translation initiation factor 2 subunit alpha homolog
Locus tag
OSNPB_030296400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 62.6), leaves after flowering (RPKM 46.6) and 6 other tissues See more
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Genomic context

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See LOC4332538 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10423783..10426860)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10372816..10375993)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271382 Neighboring gene mitochondrial import inner membrane translocase subunit TIM22-4 Neighboring gene glucan endo-1,3-beta-glucosidase 9 Neighboring gene egg cell-secreted protein 1.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic 48S preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of eukaryotic translation initiation factor 2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 2 subunit alpha homolog
Names
Os03g0296400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    10423783..10426860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776562.3 → XP_015632048.1  eukaryotic translation initiation factor 2 subunit alpha homolog

    UniProtKB/TrEMBL
    A0A8J8YMS4, A2XFL2, A3AGZ9, Q0DSP5, Q10MT2, Q2WEA7
    Conserved Domains (1) summary
    PTZ00248
    Location:2 → 323
    PTZ00248; eukaryotic translation initiation factor 2 subunit 1; Provisional
Nucleotide Protein
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