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LOC4332523 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332523, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4332523
Gene description
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Locus tag
OSNPB_030294200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 12.6), roots before flowering (RPKM 11.4) and 6 other tissues See more
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Genomic context

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See LOC4332523 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10309353..10321273)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10258533..10270790)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355715 Neighboring gene uncharacterized LOC107277633 Neighboring gene INCREASED PETAL GROWTH ANISOTROPY 1-like protein 1 Neighboring gene trihelix transcription factor ENAP2-like Neighboring gene trihelix transcription factor ENAP2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 6-phosphofructo-2-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fructose-2,6-bisphosphate 2-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fructose 2,6-bisphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fructose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Names
Os03g0294200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    10309353..10321273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774918.3 → XP_015630404.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X1

    Conserved Domains (4) summary
    smart01065
    Location:17 → 103
    CBM_2; Starch binding domain
    pfam00300
    Location:527 → 702
    His_Phos_1; Histidine phosphatase superfamily (branch 1)
    pfam01591
    Location:306 → 524
    6PF2K; 6-phosphofructo-2-kinase
    pfam13671
    Location:319 → 475
    AAA_33; AAA domain

  2. XM_015774919.3 → XP_015630405.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2

    Conserved Domains (4) summary
    smart01065
    Location:17 → 103
    CBM_2; Starch binding domain
    pfam00300
    Location:526 → 701
    His_Phos_1; Histidine phosphatase superfamily (branch 1)
    pfam01591
    Location:305 → 523
    6PF2K; 6-phosphofructo-2-kinase
    pfam13671
    Location:318 → 474
    AAA_33; AAA domain

  3. XM_066308557.1 → XP_066164654.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X3

  4. XM_015774920.3 → XP_015630406.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X4

    UniProtKB/TrEMBL
    Q0DSQ9, Q10MV4, Q10MV5
    Conserved Domains (3) summary
    smart01065
    Location:17 → 103
    CBM_2; Starch binding domain
    pfam01591
    Location:240 → 451
    6PF2K; 6-phosphofructo-2-kinase
    pfam00300
    Location:454 → 629
    His_Phos_1; Histidine phosphatase superfamily (branch 1)

RNA

  1. XR_001544499.3 RNA Sequence

  2. XR_010740020.1 RNA Sequence

Nucleotide Protein
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