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LOC4332467 mitochondrial hydrolase YKR070W [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332467, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4332467
Gene description
mitochondrial hydrolase YKR070W
Locus tag
OSNPB_030284500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4332467 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9834460..9839406, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9783784..9788816, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator-like PRR73 Neighboring gene large ribosomal subunit protein uL10c Neighboring gene Thioredoxin-like protein AAED1, chloroplastic Neighboring gene cysteine-rich receptor-like protein kinase 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in glycerophospholipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial hydrolase YKR070W
Names
Os03g0284500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    9834460..9839406 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772624.3 → XP_015628110.1  mitochondrial hydrolase YKR070W isoform X2

    Conserved Domains (1) summary
    TIGR01456
    Location:47 → 276
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

  2. XM_015772623.2 → XP_015628109.1  mitochondrial hydrolase YKR070W isoform X1

    UniProtKB/TrEMBL
    A0A0N7KH22, B8ALJ2, Q0DSW2, Q8GZY3
    Conserved Domains (1) summary
    TIGR01456
    Location:47 → 383
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
Nucleotide Protein
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