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LOC4332324 partner of Y14 and mago [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332324, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4332324
Gene description
partner of Y14 and mago
Locus tag
OSNPB_030262100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4332324 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (8618638..8622080)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (8568430..8572043)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 1 Neighboring gene uncharacterized LOC136355857 Neighboring gene mitogen-activated protein kinase kinase kinase 1 Neighboring gene uncharacterized LOC4332326

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exon-exon junction complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
partner of Y14 and mago
Names
Os03g0262100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    8618638..8622080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309026.1 → XP_066165123.1  partner of Y14 and mago isoform X3

  2. XM_015772745.3 → XP_015628231.1  partner of Y14 and mago isoform X1

    UniProtKB/TrEMBL
    A0A8J8YG24, B8AKC2, B9F756, Q0DT99, Q10NR2
    Conserved Domains (1) summary
    pfam09282
    Location:24 → 50
    Mago-bind; Mago binding

  3. XM_066309027.1 → XP_066165124.1  partner of Y14 and mago isoform X4

  4. XM_015772746.3 → XP_015628232.1  partner of Y14 and mago isoform X2

    UniProtKB/TrEMBL
    Q84QA2
    Conserved Domains (1) summary
    pfam09282
    Location:24 → 50
    Mago-bind; Mago binding
Nucleotide Protein
Heading Accession and Version

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